SRTsim

SRTsim is an independent, reproducible, and flexible Spatially Resolved Transcriptomics (SRT) simulation framework that can be used to facilitate the development of SRT analytical methods for a wide variety of SRT-specific analyses.

How to install SRTsim

1. Install devtools if necessary

install.packages('devtools')

2. Install SRTsim

XQuartz is necessary for OpenGL support on macOS. To install it, visit the XQuartz website and follow the installation instructions.

devtools::install_github('xzhoulab/SRTsim')

3. Load package

library(SRTsim)

How to cite SRTsim

Jiaqiang Zhu, Lulu Shang and Xiang Zhou#. SRTsim: A simulator for spatially resolved transcriptomics, 2022.

How to use SRTsim

Details in here