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Thoroughly Caffeinated
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Thoroughly Caffeinated
124 followers · 80 following

Achievements

Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: StarstruckAchievement: YOLOAchievement: QuickdrawAchievement: Mars 2020 ContributorAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: StarstruckAchievement: YOLOAchievement: QuickdrawAchievement: Mars 2020 ContributorAchievement: Arctic Code Vault Contributor

Highlights

Organizations

@GordonLab @ClinDesk @TheMITTech @BradnerLab @mit @Chaudhuri-Lab @mcwdsi

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semenko/README.md

semenko 👋: Engineer (MIT EECS) · Practicing physician-scientist (MD/PhD) · Building @ Two River Bio (stealth, venture-backed)

Now: designing medicines 💊. Before: NIH-funded founding faculty at MCW's Data Science Institute, building ML for liquid biopsies (cell-free DNA & RNA 🧬). Always: security, and medical alignment. → https://nick.semenkovich.com

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  1. sts-risk-calculator-cli sts-risk-calculator-cli Public

    A Python command line tool to query the Society of Thoracic Surgeons (STS) Adult Cardiac Risk Calculator API with bulk patient records.

    Python 8 1

  2. mcwdsi/bam2tensor mcwdsi/bam2tensor Public

    Convert methylation data to sparse objects for machine learning.

    Python 1

  3. chrome-force-pdf-inline chrome-force-pdf-inline Public

    A Chrome extension to force PDFs to render inline (overrides Content-Disposition: attachment).

    JavaScript 20 6

  4. chrome-limit-history-lifetime chrome-limit-history-lifetime Public

    Persistent history entries are annoying. This Chrome extension limits history entries to a user-adjustable value.

    JavaScript 9 2

  5. serpent-methylation-pipeline serpent-methylation-pipeline Public

    An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.

    Python 11 5

  6. EFForg/https-everywhere EFForg/https-everywhere Public archive

    A browser extension that encrypts your communications with many websites that offer HTTPS but still allow unencrypted connections.

    JavaScript 3.4k 1.1k