Issues

• Add support for hdf5plugin and import it by default (maybe optionally)

  open2c/cooler#485 · Filter by author mimakaev opened on Jul 24, 2026

• Allow multi enzyme digest

  enhancement
  open2c/cooler#401 · Filter by author nvictus opened on Mar 8, 2024

• Store marginals (cis, total) in cooler

  enhancement
  open2c/cooler#351 · Filter by author Phlya opened on Oct 16, 2023

• Upper variance limit to abort balancing?

  enhancement
  open2c/cooler#318 · Filter by author Phlya opened on Mar 29, 2023

• INFO:cooler.balance:variance is nan

  open2c/cooler#262 · Filter by author aakashsur opened on Aug 27, 2021
  1

• Balancing enhancements

  enhancementhelp wanted
  open2c/cooler#210 · Filter by author nvictus opened on Jun 30, 2020

• Ignore diagonals in API?

  apienhancement
  open2c/cooler#197 · Filter by author Phlya opened on May 6, 2020

• suggestions/improvements to the split-apply-combine pipeline

  internals
  open2c/cooler#167 · Filter by author golobor opened on Jun 10, 2019

• check_integrity utility

  enhancement
  open2c/cooler#151 · Filter by author gfudenberg opened on Feb 11, 2019

• in cload pairs, use DCIC pairs format by default

  enhancement
  open2c/cooler#144 · Filter by author golobor opened on Jan 7, 2019
  1

• custom pixel transforms

  apienhancement
  open2c/cooler#122 · Filter by author nvictus opened on Jul 11, 2018

• store the CLI command that was used to create a cooler?..

  enhancement
  open2c/cooler#118 · Filter by author golobor opened on May 13, 2018
  2

• Different assemblies on each axis

  schema
  open2c/cooler#113 · Filter by author pkerpedjiev opened on Mar 10, 2018

• Standard location and format for expected and summary statistics

  schema
  open2c/cooler#112 · Filter by author nvictus opened on Mar 10, 2018

• metadata for cooler balance is hard to find

  api
  open2c/cooler#86 · Filter by author golobor opened on Oct 5, 2017
  7