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HPCing
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HPCing
50 followers · 36 following

Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Organizations

@HCEMM

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iquasere/README.md

Hi there! 👋

I was a PhD student, using bioinformatics to "Uncover the role of conductive nanomaterials in anaerobic digestion".

Tools for meta-omics analyses

My work has mostly been the development of tools for analyses of meta-omics data, i.e., the study of the collective genomes, transcriptomes or proteomes of a microbial community.

These are the main tools I have developed for meta-omics analyses:

UPIMAPI, reCOGnizer and KEGGCharter

UPIMAPI, reCOGnizer and KEGGCharter are tools developed for the analyses of omics data, and optimized for handling the challenges of meta-omics.

MOSCA

MOSCA is a powerful pipeline developed for metagenomics (MG), metatranscriptomics (MT) and metaproteomics (MP) integrated analyses.

Finally, some metrics about my coding routine:

Code Time

AI Code Time

I'm an Early 🐤

🌞 Morning                1689 commits        ██████░░░░░░░░░░░░░░░░░░░   23.52 % 
🌆 Daytime                3795 commits        █████████████░░░░░░░░░░░░   52.86 % 
🌃 Evening                1346 commits        █████░░░░░░░░░░░░░░░░░░░░   18.75 % 
🌙 Night                  350 commits         █░░░░░░░░░░░░░░░░░░░░░░░░   04.87 %

📅 I'm Most Productive on Wednesday

Monday                   1290 commits        ████░░░░░░░░░░░░░░░░░░░░░   17.97 % 
Tuesday                  1644 commits        ██████░░░░░░░░░░░░░░░░░░░   22.90 % 
Wednesday                1771 commits        ██████░░░░░░░░░░░░░░░░░░░   24.67 % 
Thursday                 1030 commits        ████░░░░░░░░░░░░░░░░░░░░░   14.35 % 
Friday                   965 commits         ███░░░░░░░░░░░░░░░░░░░░░░   13.44 % 
Saturday                 57 commits          ░░░░░░░░░░░░░░░░░░░░░░░░░   00.79 % 
Sunday                   423 commits         █░░░░░░░░░░░░░░░░░░░░░░░░   05.89 %

📊 This Week I Spent My Time On

💬 Programming Languages: 
YAML                     2 hrs 24 mins       ████████████████████░░░░░   80.99 % 
Markdown                 24 mins             ████░░░░░░░░░░░░░░░░░░░░░   14.01 % 
Nginx configuration file 5 mins              █░░░░░░░░░░░░░░░░░░░░░░░░   02.85 % 
JSON                     3 mins              █░░░░░░░░░░░░░░░░░░░░░░░░   02.04 % 
Python                   0 secs              ░░░░░░░░░░░░░░░░░░░░░░░░░   00.11 % 

🐱‍💻 Projects: 
ansible-puli             2 hrs 57 mins       █████████████████████████   100.00 %

🤖 AI Coding This Week

No AI Coding Activity Tracked This Week

I Mostly Code in Python

Python                   11 repos            ████████░░░░░░░░░░░░░░░░░   32.35 % 
HTML                     10 repos            ███████░░░░░░░░░░░░░░░░░░   29.41 % 
Java                     4 repos             ███░░░░░░░░░░░░░░░░░░░░░░   11.76 % 
Shell                    2 repos             █░░░░░░░░░░░░░░░░░░░░░░░░   05.88 % 
JavaScript               1 repo              █░░░░░░░░░░░░░░░░░░░░░░░░   02.94 %

Last Updated on 18/10/2026 21:08:51 UTC

Pinned Loading

  1. reCOGnizer reCOGnizer Public

    A tool for domain based annotation with databases from the Conserved Domains Database

    HTML 29 3

  2. UPIMAPI UPIMAPI Public

    UniProt Id Mapping through API

    Python 39 5

  3. KEGGCharter KEGGCharter Public

    A tool for representing genomic potential and transcriptomic expression into KEGG pathways

    Python 63 7

  4. MOSCA MOSCA Public

    Meta-Omics Software for Community Analysis

    Python 36 7

  5. annotation_paper annotation_paper Public

    UPIMAPI, reCOGnizer and KEGGCharter: bioinformatics tools for fast functional annotation and visualization of (meta)-omics datasets

    Python 4

  6. MOSGUITO MOSGUITO Public

    MOSca's GUI TO perform meta-omics analyses

    HTML 2 2