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@digenoma-lab

digenoma lab

The Di Genoma Lab is a research group that combine the development of new algorithms, genome analyses, and omic technologies to study complex biological systems
README.md

Di Genoma Lab

hi 👋! welcome to the Di genoma lab.

Short description

We are a Chilean-based research group that combines the development of new algorithms, genome analysis, and omics technologies to study complex biological systems.

Main Repositories

Genome Assembly

We have developped the following tools for de novo assembly of genomes:

  1. Wengan is an accurate and ultra-fast hybrid genome assembler.
  2. Fast-SG is an alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.

Cancer Genomics

We have developed, in conjunction with IARCbioinfo, the following workflows to study cancer genomes:

  1. purple-nf a nextflow pipeline for somatic Copy Number Variant calling with PURPLE.
  2. sv_somatic_cns consensus calling of Somatic structural variants from Paired WGS.
  3. ampliconarchitect-nf a nextflow pipeline to discover ecDNA on cancer genomes
  4. nf-gene-fusions a nextflow pipeline to call somatic mRNA fusions

Pinned Loading

  1. wengan wengan Public

    Forked from adigenova/wengan

    An accurate and ultra-fast hybrid genome assembler

    Perl

Repositories

Showing 10 of 66 repositories
  • BRCA Public

    Nexflow pipeline for processing target BRCA data

    digenoma-lab/BRCA's past year of commit activity
    Nextflow 1 MIT 0 0 0 Updated Oct 5, 2026
  • HistologyMultiInstanceLearning Public

    Nextflow pipeline to evaluate MIL architectures in concordance with histology foundational models.

    digenoma-lab/HistologyMultiInstanceLearning's past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Sep 29, 2026
  • HistoMILTrainer Public

    Python library to train Multi Instance Learning algorithms in histology for custom tasks.

    digenoma-lab/HistoMILTrainer's past year of commit activity
    Jupyter Notebook 2 MIT 2 0 0 Updated Sep 28, 2026
  • rfhap_ms Public

    Figures and analysis for RFHAP manuscript

    digenoma-lab/rfhap_ms's past year of commit activity
    HTML 0 MIT 0 0 0 Updated Sep 4, 2026
  • HistologyFeatureExtraction Public

    Nextflow pipeline to extract features in histology WSIs.

    digenoma-lab/HistologyFeatureExtraction's past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Aug 23, 2026
  • alndv Public

    call variants with deepvariant

    digenoma-lab/alndv's past year of commit activity
    Nextflow 4 MIT 0 0 0 Updated Aug 19, 2026
  • MANTIS Public

    Multimodal Alignment of Normalized Tissue Sections

    digenoma-lab/MANTIS's past year of commit activity
    Python 0 MIT 1 0 0 Updated Jul 30, 2026
  • HistologyEvaluateMIL Public

    Nextflow pipeline to evaluate Multi Instance Learning approaches using IHC slides as ground truth.

    digenoma-lab/HistologyEvaluateMIL's past year of commit activity
    Nextflow 1 MIT 0 0 0 Updated Jul 23, 2026
  • LEMUR Public

    Local ancestry & Epigenetic Methylation for differential Regions

    digenoma-lab/LEMUR's past year of commit activity
    C++ 0 MIT 0 0 0 Updated Jul 4, 2026
  • Pipelines Public

    Repository to organize pipelines and repositories of DiGenomaLab.

    digenoma-lab/Pipelines's past year of commit activity
    0 MIT 0 0 0 Updated Jul 3, 2026
View all repositories

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