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Centralize SIMD with Highway and vendor all dependencies as submodules - #39

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KimYannn wants to merge 14 commits into

OpenGene:mainfrom

KimYannn:main

Closed

Centralize SIMD with Highway and vendor all dependencies as submodules#39
KimYannn wants to merge 14 commits into
OpenGene:mainfrom
KimYannn:main

Commits on Feb 26, 2026
- feat: add Highway SIMD library as git submodule (v1.3)
  
  KimYannn
  and
  claude
  committed
  42ad9b7
- build: switch Highway from system library to vendored third_party submodule
  
  KimYannn
  and
  claude
  committed
  936b9de
- feat: add centralized SIMD module with Highway multi-target dispatch
  
  KimYannn
  and
  claude
  committed
  d4a6b14
- perf: centralize SIMD with Highway multi-target dispatch
  
  KimYannn
  and
  claude
  committed
  201eebb
- docs: fix overflow comment in CountQualityMetricsImpl
  
  KimYannn
  and
  claude
  committed
  7c185ae
- test: add ONT dummy data generator for e2e benchmarking
  
  KimYannn
  and
  claude
  committed
  4ab790f
- build: vendor isa-l and libdeflate as submodules with dual-mode Makefile
  
  KimYannn
  and
  claude
  committed
  827639d
- docs: update build instructions for submodule-based compilation
  
  KimYannn
  and
  claude
  committed
  92270a2
- build: simplify to static-only build from submodules
  
  KimYannn
  and
  claude
  committed
  9986af8
- build: add googletest as submodule, remove system gtest dependency
  
  KimYannn
  and
  claude
  committed
  c9ac5be
- build: enable isa-l NEON assembly on ARM macOS
  
  KimYannn
  and
  claude
  committed
  459f02e
- ci: update workflow for submodule-based static build
  
  KimYannn
  and
  claude
  committed
  1a3d95a
- ci: upgrade to macos-15 for Xcode 17+ ARM assembly support
  
  KimYannn
  and
  claude
  committed
  f3bf01a
Commits on Feb 28, 2026
- perf: use TableLookupBytes for reverseComplement SIMD
  
  KimYannn
  and
  claude
  committed
  0cb9269

Commits

Commits on Feb 26, 2026

Commits on Feb 28, 2026