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1. MIC-DKFZ/napari-nninteractive MIC-DKFZ/napari-nninteractive Public

   nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diver…

   Python 125 20

2. MIC-DKFZ/nnWorkbench MIC-DKFZ/nnWorkbench Public

   GUI and CLI for nnU-Net and nnInteractive-powered annotation. Train, validate and apply nnU-Net on labelled images, or start from unlabelled ones: create labels with nnInteractive and scribbles, th…

   Python 2

3. MIC-DKFZ/semantic_segmentation MIC-DKFZ/semantic_segmentation Public

   A modular and extensible framework for training and evaluating semantic segmentation models with PyTorch Lightning, supporting multiple architectures, datasets, losses, and data augmentation pipeli…

   Python 26 5

4. MIC-DKFZ/ToothSeg MIC-DKFZ/ToothSeg Public

   Python 60 7

5. MIC-DKFZ/napari-data-inspection MIC-DKFZ/napari-data-inspection Public

   Data Inspection Plugin, designed to streamline file navigation and enhance the efficiency of data inspection.

   Python 15 1

6. MIC-DKFZ/ViData MIC-DKFZ/ViData Public

   A unified Python toolkit for managing, processing, and analyzing 2D and 3D vision data — from raw files to task-aware analytics. Designed to streamline computer vision and medical imaging workflows…

   Python 4